LAMMPSKit
Contents:
Installation
Quick Start
API Reference
Examples
Data Formats
API Documentation:
lammpskit package
lammpskit.config module
lammpskit.io package
lammpskit.plotting package
lammpskit.ecellmodel package
LAMMPSKit
Index
Edit on GitHub
Index
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A
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C
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D
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E
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F
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I
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L
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M
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P
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R
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S
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T
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V
_
__init__() (lammpskit.ecellmodel.filament_layer_analysis.MockOvitoModifiers method)
(lammpskit.plotting.DualAxisPlotConfig method)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig method)
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig method)
(lammpskit.plotting.TimeSeriesPlotConfig method)
,
[1]
A
alpha (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
analyze_clusters() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
C
calculate_atomic_distributions() (in module lammpskit.ecellmodel.data_processing)
calculate_charge_distributions() (in module lammpskit.ecellmodel.data_processing)
calculate_frequency_label() (in module lammpskit.plotting.timeseries_plots)
calculate_mean_std_label() (in module lammpskit.plotting.timeseries_plots)
calculate_z_bins_setup() (in module lammpskit.ecellmodel.data_processing)
create_dual_axis_plot() (in module lammpskit.plotting.timeseries_plots)
create_time_series_plot() (in module lammpskit.plotting.timeseries_plots)
D
DualAxisPlotConfig (class in lammpskit.plotting)
(class in lammpskit.plotting.timeseries_plots)
E
extract_element_label_from_filename() (in module lammpskit.ecellmodel.data_processing)
F
fontsize_labels (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
fontsize_legend (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
fontsize_ticks (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
fontsize_title (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
format (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
I
import_file() (in module lammpskit.ecellmodel.filament_layer_analysis)
include_line (lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
include_scatter (lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
L
lammpskit
module
,
[1]
lammpskit.config
module
lammpskit.ecellmodel.data_processing
module
lammpskit.ecellmodel.filament_layer_analysis
module
lammpskit.io.lammps_readers
module
lammpskit.plotting.timeseries_plots
module
lammpskit.plotting.utils
module
legend_framealpha (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
linewidth (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
M
main() (in module lammpskit.ecellmodel.filament_layer_analysis)
marker (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
markersize (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.TimeSeriesPlotConfig attribute)
,
[1]
(lammpskit.plotting.TimeSeriesPlotConfig attribute)
,
[1]
MockOvitoModifiers (class in lammpskit.ecellmodel.filament_layer_analysis)
module
lammpskit
,
[1]
lammpskit.config
lammpskit.ecellmodel.data_processing
lammpskit.ecellmodel.filament_layer_analysis
lammpskit.io.lammps_readers
lammpskit.plotting.timeseries_plots
lammpskit.plotting.utils
P
plot_atomic_charge_distribution() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
plot_atomic_distribution() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
plot_displacement_comparison() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
plot_displacement_timeseries() (in module lammpskit.ecellmodel.filament_layer_analysis)
plot_multiple_cases() (in module lammpskit.plotting.utils)
primary_color (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
primary_legend_loc (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
R
read_coordinates() (in module lammpskit.io)
(in module lammpskit.io.lammps_readers)
read_displacement_data() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
read_structure_info() (in module lammpskit.io)
(in module lammpskit.io.lammps_readers)
S
save_and_close_figure() (in module lammpskit.plotting.timeseries_plots)
secondary_color (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
secondary_legend_loc (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
select_atom_types_from_coordinates() (in module lammpskit.ecellmodel.data_processing)
T
tight_layout (lammpskit.plotting.DualAxisPlotConfig attribute)
,
[1]
(lammpskit.plotting.timeseries_plots.DualAxisPlotConfig attribute)
,
[1]
TimeSeriesPlotConfig (class in lammpskit.plotting)
(class in lammpskit.plotting.timeseries_plots)
track_filament_evolution() (in module lammpskit.ecellmodel)
(in module lammpskit.ecellmodel.filament_layer_analysis)
V
validate_chunks_parameter() (in module lammpskit.config)
validate_cluster_parameters() (in module lammpskit.config)
validate_dataindex() (in module lammpskit.config)
validate_file_list() (in module lammpskit.config)
validate_filepath() (in module lammpskit.config)
validate_loop_parameters() (in module lammpskit.config)